I partly solved this problem by upgrading step-by-step, that is, first
upgraded 3.4 to 3.5 and then upgraded 3.5 to 4.0. However, when trying to
upgrade 4.0 to 4.1 it failed. Log first reports "[R40000XWIKI6990] -
Converting 685 object IDs in 11 tables, 3 custom mapped tables and 3
collection tables... " and then "SQL Error: 17008, SQLState: 08003".
I'm
currently staying at 4.0.
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